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1.
Adv Clin Exp Med ; 31(12): 1319-1326, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-36083252

RESUMEN

BACKGROUND: Carotid atherosclerosis (CAS) is one of the main causes of ischemic stroke. Currently, the clinical evidence for contrast-enhanced ultrasonography (CEUS) as a method for diagnosing CAS is still inadequate. Sirtuin-3 (SIRT3) is associated with the inflammation response; however, few studies have evaluated SIRT3 in CAS. OBJECTIVES: To investigate the role of SIRT3 in CAS patients and its diagnostic value for unstable plaques when combined with CEUS. MATERIAL AND METHODS: This is a prospective observational study including 517 CAS patients who were admitted to our hospital from January 2015 to December 2020. All patients received a normal Doppler ultrasound, CEUS and magnetic resonance imaging (MRI). The latter was used as the gold standard in evaluating plaque conditions. Serum SIRT3 levels were measured using an enzyme-linked immunosorbent assay (ELISA). Serum levels of total cholesterol (TC), triglycerides (TG), high-density lipoprotein cholesterol (HDL-ch), low-density lipoprotein cholesterol (LDL-ch), C-reactive protein (CRP), and interleukin (IL)-6 levels were measured and recorded. RESULTS: Patients with severe CAS showed significantly higher levels of CRP, IL-6, TC, and LDL-ch, a higher frequency of unstable plaques, as well as a lower level of HDL-ch. In patients with severe CAS and CAS patients with stable plaques, the levels of SIRT3 were markedly lower. Patients with a high expression of SIRT3 showed significantly lower levels of CRP, IL-6, TC and LDL-ch, and higher levels of HDL-ch, as well as a lower frequency of unstable plaques. Receiver operating characteristic (ROC) curves showed that the combination of CEUS and SIRT3 could achieve high sensitivity and specificity in the diagnosis of unstable plaques. High levels of C-reactive protein, IL-6, TC, TG and LDL-ch, as well as low levels of SIRT3 and HDL-ch, and current smoking were risk factors of unstable plaques in CAS patients. CONCLUSIONS: A low expression of SIRT3 predicted a higher risk for unstable plaques in CAS patients. The combination of CEUS and SIRT3 is a potential strategy for diagnosing unstable plaques.


Asunto(s)
Enfermedades de las Arterias Carótidas , Placa Aterosclerótica , Sirtuina 3 , Humanos , Proteína C-Reactiva/química , Enfermedades de las Arterias Carótidas/diagnóstico por imagen , Enfermedades de las Arterias Carótidas/patología , HDL-Colesterol , LDL-Colesterol , Interleucina-6 , Placa Aterosclerótica/química , Placa Aterosclerótica/diagnóstico por imagen , Sirtuina 3/química , Sirtuina 3/metabolismo , Triglicéridos , Ultrasonografía/métodos
2.
Nucleic Acids Res ; 49(8): 4203-4219, 2021 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-33706382

RESUMEN

Sirtuin 3 (SIRT3) is an NAD+-dependent deacetylase linked to a broad range of physiological and pathological processes, including aging and aging-related diseases. However, the role of SIRT3 in regulating human stem cell homeostasis remains unclear. Here we found that SIRT3 expression was downregulated in senescent human mesenchymal stem cells (hMSCs). CRISPR/Cas9-mediated depletion of SIRT3 led to compromised nuclear integrity, loss of heterochromatin and accelerated senescence in hMSCs. Further analysis indicated that SIRT3 interacted with nuclear envelope proteins and heterochromatin-associated proteins. SIRT3 deficiency resulted in the detachment of genomic lamina-associated domains (LADs) from the nuclear lamina, increased chromatin accessibility and aberrant repetitive sequence transcription. The re-introduction of SIRT3 rescued the disorganized heterochromatin and the senescence phenotypes. Taken together, our study reveals a novel role for SIRT3 in stabilizing heterochromatin and counteracting hMSC senescence, providing new potential therapeutic targets to ameliorate aging-related diseases.


Asunto(s)
Envejecimiento/metabolismo , Heterocromatina/metabolismo , Sirtuina 3/fisiología , Envejecimiento/genética , Animales , Proteína 9 Asociada a CRISPR , Sistemas CRISPR-Cas , Células Cultivadas , Senescencia Celular/genética , Senescencia Celular/fisiología , Técnicas de Inactivación de Genes , Células HEK293 , Heterocromatina/genética , Humanos , Masculino , Células Madre Mesenquimatosas/metabolismo , Células Madre Mesenquimatosas/fisiología , Ratones , Ratones Desnudos , Ratones SCID , Membrana Nuclear/metabolismo , Dominios Proteicos , Sirtuina 3/química , Sirtuina 3/genética
3.
J Chem Inf Model ; 61(3): 1105-1124, 2021 03 22.
Artículo en Inglés | MEDLINE | ID: mdl-33606530

RESUMEN

Sirt1-3 are the most studied sirtuins, playing a key role in caloric-dependent epigenetic modifications. Since they are localized in distinct cellular compartments and act differently under various pathological conditions, selective inhibition would be a promising strategy to understand their biological function and to discover effective therapeutics. Here, sirtuin's inhibitor Ex527* is used as a probe to speculate the possible root cause of selective inhibition and differential structural dynamics of Sirt1-3. Comparative energetics and mutational studies revealed the criticality of residues I279 and I316 for the Sirt1 selectivity toward Ex527*. Furthermore, essential dynamics and residue network analysis revealed that the side-chain reorientation in residue F190 due to nonconserved residue Y191 played a major role in the formation of an extended selectivity pocket in Sirt2. These changes at the dynamical and residual level, which impact the internal wiring significantly, might help in rationally designing selective inhibitors against Sirt1-3.


Asunto(s)
Sirtuina 1/química , Sirtuina 2/química , Sirtuina 3/química , Secuencia de Aminoácidos , Humanos , Conformación Proteica
4.
Bioorg Med Chem ; 28(7): 115356, 2020 04 01.
Artículo en Inglés | MEDLINE | ID: mdl-32067892

RESUMEN

Past few years have seen an active pursuit of the inhibitors for the deacylation catalyzed by the seven human sirtuins (i.e. SIRT1-7) as valuable chemical biological/pharmacological probes of this enzymatic deacylation and lead compounds for developing novel therapeutics for human diseases. In the current study, we prepared eight monocyclic and one bicyclic analogs of a linear pentapeptide-based potent (sub-µM IC50's) pan-SIRT1/2/3 inhibitor Zheng laboratory discovered recently that harbors the catalytic mechanism-based SIRT1/2/3 inhibitory warhead Nε-thioacetyl-lysine at its central position. We found that the bicyclic analog exhibited largely comparable SIRT1/2/3 inhibitory potencies to those of the parent linear pentapeptide, however, the former is proteolytically much more stable than the latter. Moreover, the bicyclic analog displayed very weak inhibition against SIRT5/6/7, was cell permeable, and exhibited an anti-proliferative effect on the human SK-MEL-2 melanoma cells. This bicyclic analog could be a lead for the future development of more potent and still selective pan-SIRT1/2/3 inhibitors whose use in studies on human sirtuin biology, pharmacology, and medicinal chemistry could complement with the use of the potent inhibitors selective for a single human sirtuin.


Asunto(s)
Lisina/análogos & derivados , Péptidos/farmacología , Sirtuina 1/antagonistas & inhibidores , Sirtuina 2/antagonistas & inhibidores , Sirtuina 3/antagonistas & inhibidores , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Regulación de la Expresión Génica/efectos de los fármacos , Humanos , Lisina/química , Modelos Moleculares , Estructura Molecular , Péptidos/química , Conformación Proteica , Sirtuina 1/química , Sirtuina 2/química , Sirtuina 3/química
5.
Int J Mol Sci ; 20(19)2019 Sep 25.
Artículo en Inglés | MEDLINE | ID: mdl-31557786

RESUMEN

Sirtuins (SIRTs) are seven nicotinamide adenine dinucleotide (NAD+)-dependent protein deacetylases enzymes (SIRT1-7) that play an important role in maintaining cellular homeostasis. Among those, the most studied are SIRT1 and SIRT3, a nuclear SIRT and a mitochondrial SIRT, respectively, which significantly impact with an increase in mammals' lifespan by modulating metabolic cellular processes. Particularly, when activated, both SIRT1 and 3 enhance pancreatic ß-cells' insulin release and reduce inflammation and oxidative stress pancreatic damage, maintaining then glucose homeostasis. Therefore, SIRT1 and 3 activators have been proposed to prevent and counteract metabolic age-related diseases, such as type 2 diabetes mellitus (T2DM). Physical activity (PA) has a well-established beneficial effect on phenotypes of aging like ß-cell dysfunction and diabetes mellitus. Recent experimental and clinical evidence reports that PA increases the expression levels of both SIRT1 and 3, suggesting that PA may exert its healthy contribute even by activating SIRTs. Therefore, in the present article, we discuss the role of SIRT1, SIRT3, and PA on ß-cell function and on diabetes. We also discuss the possible interaction between PA and activation of SIRTs as a possible therapeutic strategy to maintain glucose hemostasis and to prevent T2DM and its complications, especially in the elderly population.


Asunto(s)
Glucosa/metabolismo , Homeostasis , Sirtuina 1/química , Sirtuina 3/química , Animales , Diabetes Mellitus Tipo 2/etiología , Diabetes Mellitus Tipo 2/metabolismo , Susceptibilidad a Enfermedades , Ejercicio Físico , Humanos , Células Secretoras de Insulina/metabolismo , Enfermedades Metabólicas/etiología , Enfermedades Metabólicas/metabolismo , Sirtuina 1/metabolismo , Sirtuina 3/metabolismo
6.
Int J Biol Macromol ; 140: 454-468, 2019 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-31404596

RESUMEN

Triple-negative breast cancer (TNBC) is an aggressive disease exemplified by a poor prognosis, greater degrees of relapse, the absence of hormonal receptors for coherent utilization of targeted therapy, poor response to currently available therapeutics and development of chemoresistance. Aberrant activity of sirtuins (SIRTs) has strong implications in the metastatic and oncogenic progression of TNBC. Synthetic SIRT inhibitors are effective, however, they have shown adverse side effects emphasizing the need for plant-derived inhibitors (PDIs). In the current study, we identified potential plant-derived sirtuin inhibitors using in silico approach i.e. molecular docking, ADMET and molecular dynamics simulations (MD). Docking studies revealed that Sulforaphane, Kaempferol and Apigenin exhibits the highest docking scores against SIRT1 & 5, 3 and 6 respectively. ADMET analysis of above hits demonstrated drug-like profile. MD of prioritized SIRTs-PDIs complexes displayed stability with insignificant deviations throughout the trajectory. Furthermore, we determined the effect of our prioritized molecules on cellular viability, global activity as well as protein expression of sirtuins and stemness of TNBC cells utilizing in vitro techniques. Our in vitro findings complements our in silico results. Collectively, these findings provide a better insight into the structural basis of sirtuin inhibition and can facilitate drug design process for TNBC management.


Asunto(s)
Apigenina/química , Isotiocianatos/química , Quempferoles/química , Sirtuinas/genética , Neoplasias de la Mama Triple Negativas/tratamiento farmacológico , Apigenina/aislamiento & purificación , Línea Celular Tumoral , Simulación por Computador , Femenino , Humanos , Isotiocianatos/aislamiento & purificación , Quempferoles/aislamiento & purificación , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Plantas/química , Sirtuina 1/antagonistas & inhibidores , Sirtuina 1/química , Sirtuina 3/antagonistas & inhibidores , Sirtuina 3/química , Sirtuinas/antagonistas & inhibidores , Sirtuinas/química , Sulfóxidos , Neoplasias de la Mama Triple Negativas/genética , Neoplasias de la Mama Triple Negativas/patología
7.
Theriogenology ; 122: 47-52, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30227304

RESUMEN

Sirtuin3 (SIRT3) is a member of the Sirtuin family of NAD+-dependent deacetylase. They have evolved as a vital protein in preventing the activation of reactive oxygen species (ROS) in oocytes. A novel study on caprine SIRT3 was conducted, to characterize caprine SIRT3, to detect potential polymorphisms in SIRT3 and to analyze their association with litter size in the two indigenous goat breeds of India viz., the prolific Malabari and low prolific Attappady Black goats. A 1070 bp mRNA sequence of SIRT3 cDNA comprised of an ORF of 1002 bp encoding 333 amino acids, having 96% identity with bovine SIRT3. The genomic DNAs from the goats (n = 222) were subjected to PCR and single strand conformation polymorphism (SSCP) of exon 5 fragment (213 bp) of caprine SIRT3. On analysis, two genotypes viz., DD and DE were observed with frequencies of 0.63 and 0.37 respectively. Further sequencing of the PCR products of the respective genotypes revealed a novel synonymous SNP (MF176159:c.691C > T). Genotypes of this fragment had a significant influence on number of kids born (P < 0.05) with DD genotype being superior to DE genotype. These results highlight the role of SIRT3 in reproduction traits and the detected novel SNP would aid in the Marker Assisted Selection programmes and thus SIRT3 can considered as a potential candidate gene for reproduction traits in goats.


Asunto(s)
Cabras/genética , Tamaño de la Camada/genética , Sirtuina 3/genética , Animales , Estudios de Asociación Genética , Genotipo , Cabras/fisiología , India , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ARN , Sirtuina 3/química
8.
Cancer Genomics Proteomics ; 15(1): 73-89, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29275365

RESUMEN

BACKGROUND/AIM: Dysregulation of mitochondrial pathways is implicated in several diseases, including cancer. Notably, mitochondrial respiration and mitochondrial biogenesis are favored in some invasive cancer cells, such as osteosarcoma. Hence, the aim of the current work was to investigate the effects of 2-methoxyestradiol (2-ME), a potent anticancer agent, on the mitochondrial biogenesis of osteosarcoma cells. MATERIALS AND METHODS: Highly metastatic osteosarcoma 143B cells were treated with 2-ME separately or in combination with L-lactate, or with the solvent (non-treated control cells). Protein levels of α-syntrophin and peroxisome proliferator-activated receptor gamma, coactivator 1 alpha (PGC-1α) were determined by western blotting. Impact of 2-ME on mitochondrial mass, regulation of cytochrome c oxidase I (COXI) expression, and succinate dehydrogenase complex flavoprotein subunit A (SDHA) was determined by immunofluorescence analyses. Inhibition of sirtuin 3 (SIRT3) activity by 2-ME was investigated by fluorescence assay and also, using molecular docking and molecular dynamics simulations. RESULTS: L-lactate induced mitochondrial biogenesis pathway via up-regulation of COXI. 2-ME inhibited mitochondrial biogenesis via regulation of PGC-1α, COXI, and SIRT3 in a concentration-dependent manner as a consequence of nuclear recruitment of neuronal nitric oxide synthase and nitric oxide generation. It was also proved that 2-ME inhibited SIRT3 activity by binding to both the canonical and allosteric inhibitor binding sites. Moreover, regardless of the mitochondrial biogenesis pathway, 2-ME affected the expression of SDHA. CONCLUSION: Herein, mitochondrial biogenesis pathway regulation and SDHA were presented as novel targets of 2-ME, and moreover, 2-ME was demonstrated as a potent inhibitor of SIRT3. L-lactate was confirmed to exert pro-carcinogenic effects on osteosarcoma cells via the induction of the mitochondrial biogenesis pathway. Thus, L-lactate level may be considered as a prognostic biomarker for osteosarcoma.


Asunto(s)
Antineoplásicos/farmacología , Complejo II de Transporte de Electrones/metabolismo , Estradiol/análogos & derivados , Osteosarcoma/enzimología , 2-Metoxiestradiol , Antineoplásicos/química , Proteínas de Unión al Calcio/metabolismo , Línea Celular Tumoral , Complejo IV de Transporte de Electrones/metabolismo , Estradiol/química , Estradiol/farmacología , Humanos , Proteínas de la Membrana/metabolismo , Mitocondrias/efectos de los fármacos , Simulación del Acoplamiento Molecular , Simulación de Dinámica Molecular , Proteínas Musculares/metabolismo , Biogénesis de Organelos , Osteosarcoma/metabolismo , Coactivador 1-alfa del Receptor Activado por Proliferadores de Peroxisomas gamma/metabolismo , Sirtuina 3/antagonistas & inhibidores , Sirtuina 3/química
9.
Free Radic Biol Med ; 112: 287-297, 2017 11.
Artículo en Inglés | MEDLINE | ID: mdl-28711502

RESUMEN

The modulation of protein acetylation network is a promising strategy for life span extension and disease treatment (Sabari et al., 2016; Giblin et al., 2014) [1,2]. A variety of small molecules have been developed to target deacetylases, but extremely few of these molecules are capable of activating the mitochondrial NAD-dependent deacetylase sirtuin-3 (SIRT3) (Gertz and Steegborn, 2016; Scholz et al., 2015) [3,4]. Manganese superoxide dismutase (MnSOD) is the major superoxide scavenger in mitochondria, whose activity is regulated by SIRT3-mediated deacetylation, particularly at the Lys68 site (Chen et al., 2011) [5]. To investigate the influence of Lys68 acetylation on MnSOD activity, we produced a mutant MnSOD protein-bearing N-acetyllysine (AcK) at its Lys68 position through the genetic code expansion approach. We solved the crystal structure of this acetylated MnSOD (MnSODK68AcK), thus revealing the structural and electrostatic basis for the significant activity decrease upon Lys68 acetylation. On the basis of an assay we developed for the SIRT3-mediated deacetylation of MnSODK68AcK, we identified a novel SIRT3 activator, 7-hydroxy-3-(4'-methoxyphenyl) coumarin (C12), which binds to SIRT3 with high affinity and can promote the deacetylation and activation of MnSOD. C12 adds to the current repertoire of extremely few SIRT3 activators, which are potentially valuable for treating a wide array of diseases via modulating the cellular acetylome.


Asunto(s)
Cumarinas/química , Lisina/análogos & derivados , Lisina/química , Procesamiento Proteico-Postraduccional , Sirtuina 3/química , Superóxido Dismutasa/química , Acetilación , Secuencia de Aminoácidos , Animales , Astrocitos/citología , Astrocitos/enzimología , Sitios de Unión , Cumarinas/metabolismo , Cristalografía por Rayos X , Activadores de Enzimas/química , Activadores de Enzimas/metabolismo , Expresión Génica , Humanos , Lisina/metabolismo , Mitocondrias/enzimología , Modelos Moleculares , Mutación , Cultivo Primario de Células , Unión Proteica , Dominios y Motivos de Interacción de Proteínas , Estructura Secundaria de Proteína , Ratas , Ratas Sprague-Dawley , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sirtuina 3/genética , Sirtuina 3/metabolismo , Electricidad Estática , Superóxido Dismutasa/genética , Superóxido Dismutasa/metabolismo
10.
Chem Res Toxicol ; 30(3): 785-793, 2017 03 20.
Artículo en Inglés | MEDLINE | ID: mdl-28248093

RESUMEN

Mitochondrial aldehyde dehydrogenase (ALDH2) plays a central role in the detoxification of reactive aldehydes generated through endogenous and exogenous sources. The biochemical regulation of enzyme activity through post-translational modification provides an intricate response system regulating mitochondrial detoxification pathways. ALDH2 is a known target of lysine acetylation, which arises as a consequence of mitochondrial bioenergetic flux and sirtuin deacetylase activity. The mitochondrial deacetylase Sirtuin 3 (SIRT3) has been reported to alter ALDH2 lysine acetylation status, yet the mechanism and consequence of this interaction remain unknown. The in vitro results presented here provide a novel biochemical approach using stable-isotope dilution mass spectrometry to elucidate which lysine residues are targeted by SIRT3 for deacetylation. Furthermore, HPLC-MS/MS and computational modeling elucidate a potential role for acetyl-Lys369 on ALDH2 in perturbing normal ß-nicotinamide adenine dinucleotide (NAD+) cofactor binding.


Asunto(s)
Aldehído Deshidrogenasa/metabolismo , Sirtuina 3/metabolismo , Acetilación , Aldehído Deshidrogenasa/química , Animales , Humanos , Lisina/química , Espectrometría de Masas , Sirtuina 3/química
11.
Mol Cell Biochem ; 426(1-2): 65-73, 2017 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-27864727

RESUMEN

The carnitine/acylcarnitine transporter (CACT; SLC25A20) mediates an antiport reaction allowing entry of acyl moieties in the form of acylcarnitines into the mitochondrial matrix and exit of free carnitine. The transport function of CACT is crucial for the ß-oxidation pathway. In this work, it has been found that CACT is partially acetylated in rat liver mitochondria as demonstrated by anti-acetyl-lys antibody immunostaining. Acetylation was reversed by the deacetylase Sirtuin 3 in the presence of NAD+. After treatment of the mitochondrial extract with the deacetylase, the CACT activity, assayed in proteoliposomes, increased. The half-saturation constant of the CACT was not influenced, while the V max was increased by deacetylation. Sirtuin 3 was not able to deacetylate the CACT when incubation was performed in intact mitoplasts, indicating that the acetylation sites are located in the mitochondrial matrix. Prediction on the localization of acetylated residues by bioinformatics correlates well with the experimental data. Recombinant CACT treated with acetyl-CoA was partially acetylated by non-enzymatic mechanism with a corresponding decrease of transport activity. The experimental data indicate that acetylation of CACT inhibits its transport activity, and thus may contribute to the regulation of the mitochondrial ß-oxidation pathway.


Asunto(s)
Carnitina Aciltransferasas/metabolismo , Proteínas Mitocondriales/metabolismo , Procesamiento Proteico-Postraduccional/fisiología , Acetilación , Animales , Transporte Biológico Activo/fisiología , Carnitina Aciltransferasas/química , Carnitina Aciltransferasas/genética , Proteínas Mitocondriales/química , Proteínas Mitocondriales/genética , NAD/química , NAD/genética , NAD/metabolismo , Ratas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sirtuina 3/química , Sirtuina 3/genética , Sirtuina 3/metabolismo
12.
J Cell Physiol ; 232(9): 2308-2311, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27791271

RESUMEN

The mammalian Sirtuins are a family of highly conserved nicotinamide adenine dinucleotide (NAD+)-dependent histone deacetylase. The mammalian Sirtuins family has identified seven different types of sirtuin. Sirtuins 3(SirT3) is localized to mitochondria, and is a multiple functional protein deacylase through deacetylating a variety of substrates. Cellular senescence represents a permanent withdraw from cell cycle in response to diverse stress; it is controlled by the p53 and retinoblastoma protein (RB) tumor suppressors, and constitutes a potent anticancer mechanisms. p53 can be deacetylated by a protein complex containing histone deacetylases (HDAC1). There is possibility that SirT3 may also deacetylate p53. We introduce the recent research on the SirT3-p53 interplay directly and indirectly, and discuss the significance of p53 deacetylation by SirT3 in the aging and cancer. J. Cell. Physiol. 232: 2308-2311, 2017. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Envejecimiento/metabolismo , Neoplasias/enzimología , Transducción de Señal , Sirtuina 3/metabolismo , Proteína p53 Supresora de Tumor/metabolismo , Acetilación , Envejecimiento/patología , Animales , Humanos , Modelos Moleculares , Neoplasias/patología , Conformación Proteica , Sirtuina 3/química , Proteína p53 Supresora de Tumor/química
13.
FEBS Lett ; 590(17): 3019-28, 2016 09.
Artículo en Inglés | MEDLINE | ID: mdl-27501476

RESUMEN

SIRT1-7 play important roles in many biological processes and age-related diseases. In addition to a NAD(+) -dependent deacetylase activity, they can catalyze several other reactions, including the hydrolysis of long-chain fatty acyl lysine. To study the binding modes of sirtuins to long-chain acyl lysines, we solved the crystal structures of SIRT3 bound to either a H3K9-myristoylated- or a H3K9-palmitoylated peptide. Interaction of SIRT3 with the palmitoyl group led to unfolding of the α3-helix. The myristoyl and palmitoyl groups bind to the C-pocket and an allosteric site near the α3-helix, respectively. We found that the residues preceding the α3-helix determine the size of the C-pocket. The flexibility of the α2-α3 loop and the plasticity of the α3-helix affect the interaction with long-chain acyl lysine.


Asunto(s)
Lisina/química , Péptidos/química , Sirtuina 3/química , Acilación , Sitios de Unión , Catálisis , Cristalografía por Rayos X , Humanos , Hidrólisis , Péptidos/metabolismo , Conformación Proteica en Hélice alfa , Sirtuina 3/metabolismo
14.
Zhonghua Gan Zang Bing Za Zhi ; 24(12): 948-951, 2016 Dec 20.
Artículo en Chino | MEDLINE | ID: mdl-28073422

RESUMEN

The deacetylase Sirtuin 3 (SIRT3) is a member of the Sirtuins mainly located in the mitochondrial matrix, and as a nicotinamide adenine dinucleotide (NAD+)-dependent deacetylase, it can regulate cellular energy metabolism and oxidative stress-related pathways. The liver is the largest solid organ in the human body and plays a very important role in substance metabolism. Based on the features of SIRT3, it is closely associated with the development and progression of certain liver diseases. This article reviews the research advances in the role of SIRT3 in non-alcoholic fatty liver disease, liver cancer, and hepatic ischemia-reperfusion injury.


Asunto(s)
Neoplasias Hepáticas/enzimología , Proteínas Mitocondriales/metabolismo , NAD/metabolismo , Enfermedad del Hígado Graso no Alcohólico/enzimología , Daño por Reperfusión/enzimología , Sirtuina 3/metabolismo , Metabolismo Energético , Humanos , Neoplasias Hepáticas/patología , Mitocondrias/enzimología , NAD/química , Enfermedad del Hígado Graso no Alcohólico/patología , Estrés Oxidativo , Sirtuina 3/química
15.
Acta Crystallogr F Struct Biol Commun ; 71(Pt 12): 1498-510, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26625292

RESUMEN

Sirtuins constitute a family of NAD(+)-dependent enzymes that catalyse the cleavage of various acyl groups from the ℇ-amino group of lysines. They regulate a series of cellular processes and their misregulation has been implicated in various diseases, making sirtuins attractive drug targets. To date, only a few sirtuin modulators have been reported that are suitable for cellular research and their development has been hampered by a lack of structural information. In this work, microseed matrix seeding (MMS) was used to obtain crystals of human Sirt3 in its apo form and of human Sirt2 in complex with ADP ribose (ADPR). Crystal formation using MMS was predictable, less error-prone and yielded a higher number of crystals per drop than using conventional crystallization screening methods. The crystals were used to solve the crystal structures of apo Sirt3 and of Sirt2 in complex with ADPR at an improved resolution, as well as the crystal structures of Sirt2 in complex with ADPR and the indoles EX527 and CHIC35. These Sirt2-ADPR-indole complexes unexpectedly contain two indole molecules and provide novel insights into selective Sirt2 inhibition. The MMS approach for Sirt2 and Sirt3 may be used as the basis for structure-based optimization of Sirt2/3 inhibitors in the future.


Asunto(s)
Cristalografía por Rayos X , Sirtuina 2/química , Sirtuina 3/química , Adenosina Difosfato Ribosa/química , Secuencia de Aminoácidos , Dominio Catalítico , Cristalización , Inhibidores Enzimáticos/farmacología , Humanos , Indoles/farmacología , Modelos Moleculares , Datos de Secuencia Molecular , NAD/metabolismo , Estructura Secundaria de Proteína
16.
Biochem Biophys Res Commun ; 468(4): 807-12, 2015 Dec 25.
Artículo en Inglés | MEDLINE | ID: mdl-26577410

RESUMEN

Mitochondrial pyruvate carrier (MPC), composed of MPC1 and MPC2, can modulate pyruvate oxidation in mitochondrial and MPC1 expression correlates with poor prognosis of multiple cancers. Here, we reported that MPC1 is acetylated and its main acetylation sites are: K45 and K46. Sirt3 binds to and deacetylates MPC1. High glucose decreases MPC1 acetylation level by increasing Sirt3-MPC1 binding. Furthermore, acetylation mimic mutation of MPC1 reduces it activity and abolishes its function in inhibition of colon cancer cell growth. These results reveal a novel post-translational regulation of MPC1 by Sirt3, which is important for its activity and colon cancer cell growth.


Asunto(s)
Proteínas de Transporte de Anión/química , Glucosa/química , Proteínas Mitocondriales/química , Modelos Químicos , Sirtuina 3/química , Acetilación , Sitios de Unión , Simulación por Computador , Activación Enzimática , Células HEK293 , Humanos , Proteínas de Transporte de Membrana Mitocondrial , Transportadores de Ácidos Monocarboxílicos , Unión Proteica , Especificidad por Sustrato
17.
Chembiochem ; 16(16): 2337-47, 2015 Nov 02.
Artículo en Inglés | MEDLINE | ID: mdl-26382620

RESUMEN

Mitochondrial enzymes implicated in the pathophysiology of diabetes, cancer, and metabolic syndrome are highly regulated by acetylation. However, mitochondrial acetyltransferases have not been identified. Here, we show that acetylation and also other acylations are spontaneous processes that depend on pH value, acyl-CoA concentration and the chemical nature of the acyl residue. In the case of a peptide derived from carbamoyl phosphate synthetase 1, the rates of succinylation and glutarylation were up to 150 times than for acetylation. These results were confirmed by using the protein substrate cyclophilin A (CypA). Deacylation experiments revealed that SIRT3 exhibits deacetylase activity but is not able to remove any of the succinyl groups from CypA, whereas SIRT5 is an effective protein desuccinylase. Thus, the acylation landscape on lysine residues might largely depend on the enzymatic activity of specific sirtuins, and the availability and reactivity of acyl-CoA compounds.


Asunto(s)
Acilcoenzima A/metabolismo , Lisina/metabolismo , Péptidos/metabolismo , Sirtuina 3/metabolismo , Acilación , Aminas/química , Aminas/metabolismo , Cristalografía por Rayos X , Ciclofilina A/química , Ciclofilina A/metabolismo , Humanos , Cinética , Lisina/química , Mitocondrias/metabolismo , Conformación Molecular , Péptidos/química , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Sirtuina 3/química , Sirtuina 3/genética , Sirtuinas/química , Sirtuinas/genética , Sirtuinas/metabolismo , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción , Termodinámica
18.
Eur J Pharm Sci ; 76: 27-32, 2015 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-25936698

RESUMEN

Sirtuins (SIRT1-SIRT7) are NAD dependent deacetylases and intriguing drug targets in for example neurodegenerative diseases and cancer. Virtual screening has been shown to be a fast and efficient method of discovering new sirtuin inhibitors. In this study, a new putative binding site on the zinc binding domain of sirtuins was utilized to screen the ZINC database virtually in order to discover new sirtuin inhibiting scaffolds. Altogether 26 compounds were tested in vitro and initially 15 inhibitors displayed >30% SIRT3 inhibition. However, the evaluation of raw data from in vitro assay revealed that many of the compounds had intrinsic property to interfere with the fluorescence signal at the assay wavelengths resulting in false positives. All compounds with over 30% SIRT3 inhibition were studied more closely for their behavior in the assay and eventually, three compounds were identified as novel sirtuin inhibitors. They displayed 32-40% SIRT3 and 21-60% SIRT2 inhibition. The inhibitors display two new scaffolds, the smaller of which can be considered as a promising fragment, which offers a base for structural optimization.


Asunto(s)
Diseño Asistido por Computadora , Diseño de Fármacos , Inhibidores de Histona Desacetilasas/farmacología , Simulación del Acoplamiento Molecular , Sirtuina 2/antagonistas & inhibidores , Sirtuina 3/antagonistas & inhibidores , Regulación Alostérica , Artefactos , Sitios de Unión , Dominio Catalítico , Inhibidores de Histona Desacetilasas/química , Inhibidores de Histona Desacetilasas/metabolismo , Unión Proteica , Conformación Proteica , Sirtuina 2/química , Sirtuina 2/metabolismo , Sirtuina 3/química , Sirtuina 3/metabolismo , Espectrometría de Fluorescencia , Relación Estructura-Actividad
19.
Biochemistry ; 54(19): 3037-3050, 2015 May 19.
Artículo en Inglés | MEDLINE | ID: mdl-25897714

RESUMEN

Acylation of lysine is an important protein modification regulating diverse biological processes. It was recently demonstrated that members of the human Sirtuin family are capable of catalyzing long chain deacylation, in addition to the well-known NAD(+)-dependent deacetylation activity [Feldman, J. L., Baeza, J., and Denu, J. M. (2013) J. Biol. Chem. 288, 31350-31356]. Here we provide a detailed kinetic and structural analysis that describes the interdependence of NAD(+)-binding and acyl-group selectivity for a diverse series of human Sirtuins, SIRT1-SIRT3 and SIRT6. Steady-state and rapid-quench kinetic analyses indicated that differences in NAD(+) saturation and susceptibility to nicotinamide inhibition reflect unique kinetic behavior displayed by each Sirtuin and depend on acyl substrate chain length. Though the rate of nucleophilic attack of the 2'-hydroxyl on the C1'-O-alkylimidate intermediate varies with acyl substrate chain length, this step remains rate-determining for SIRT2 and SIRT3; however, for SIRT6, this step is no longer rate-limiting for long chain substrates. Cocrystallization of SIRT2 with myristoylated peptide and NAD(+) yielded a co-complex structure with reaction product 2'-O-myristoyl-ADP-ribose, revealing a latent hydrophobic cavity to accommodate the long chain acyl group, and suggesting a general mechanism for long chain deacylation. Comparing two separately determined co-complex structures containing either a myristoylated peptide or 2'-O-myristoyl-ADP-ribose indicates there are conformational changes at the myristoyl-ribose linkage with minimal structural differences in the enzyme active site. During the deacylation reaction, the fatty acyl group is held in a relatively fixed position. We describe a kinetic and structural model to explain how various Sirtuins display unique acyl substrate preferences and how different reaction kinetics influence NAD(+) dependence. The biological implications are discussed.


Asunto(s)
Sirtuinas/química , Sirtuinas/metabolismo , Acilación , Catálisis , Humanos , Cinética , NAD , Niacinamida/metabolismo , Unión Proteica , Sirtuina 1/química , Sirtuina 1/metabolismo , Sirtuina 2/química , Sirtuina 2/metabolismo , Sirtuina 3/química , Sirtuina 3/metabolismo
20.
PLoS One ; 10(3): e0122297, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25811481

RESUMEN

SIRT3 and SIRT5 have been shown to regulate mitochondrial fatty acid oxidation but the molecular mechanisms behind the regulation are lacking. Here, we demonstrate that SIRT3 and SIRT5 both target human very long-chain acyl-CoA dehydrogenase (VLCAD), a key fatty acid oxidation enzyme. SIRT3 deacetylates and SIRT5 desuccinylates K299 which serves to stabilize the essential FAD cofactor in the active site. Further, we show that VLCAD binds strongly to cardiolipin and isolated mitochondrial membranes via a domain near the C-terminus containing lysines K482, K492, and K507. Acetylation or succinylation of these residues eliminates binding of VLCAD to cardiolipin. SIRT3 deacetylates K507 while SIRT5 desuccinylates K482, K492, and K507. Sirtuin deacylation of recombinant VLCAD rescues membrane binding. Endogenous VLCAD from SIRT3 and SIRT5 knockout mouse liver shows reduced binding to cardiolipin. Thus, SIRT3 and SIRT5 promote fatty acid oxidation by converging upon VLCAD to promote its activity and membrane localization. Regulation of cardiolipin binding by reversible lysine acylation is a novel mechanism that is predicted to extrapolate to other metabolic proteins that localize to the inner mitochondrial membrane.


Asunto(s)
Acil-CoA Deshidrogenasa de Cadena Larga/metabolismo , Cardiolipinas/metabolismo , Sirtuina 3/metabolismo , Sirtuinas/metabolismo , Acil-CoA Deshidrogenasa de Cadena Larga/química , Acilación , Secuencia de Aminoácidos , Animales , Sitios de Unión , Cardiolipinas/química , Dominio Catalítico , Activación Enzimática , Flavina-Adenina Dinucleótido/química , Flavina-Adenina Dinucleótido/metabolismo , Ratones , Ratones Noqueados , Mitocondrias Hepáticas/metabolismo , Membranas Mitocondriales/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Unión Proteica , Conformación Proteica , Dominios y Motivos de Interacción de Proteínas , Alineación de Secuencia , Sirtuina 3/química , Sirtuina 3/genética , Sirtuinas/química , Sirtuinas/genética
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